Why should you work with me ?
Bioinformatics MSc student with a BSc in Biotechnology and a diploma in Biochemistry, focused on NGS data analysis and machine learning for biological problems.
I've built an end-to-end RNA-seq workflow: data retrieval (SRA Toolkit), quality control (FastQC), trimming, alignment, SAMtools/BAM processing, read quantification (featureCounts), and differential expression analysis with DESeq2 in R. In my Catharanthus roseus project, I identified genes involved in the terpenoid indole alkaloid (TIA) biosynthesis pathway and applied machine learning to support the predictions.
On the ML side, I've trained and compared multiple models, including Random Forest, SVM, and XGBoost, in Python and R, and applied them to biological tasks such as bacterial promoter prediction.
My toolkit: Python, R, Bash/Linux, and Nextflow. I'm seeking a bioinformatics role where I can contribute to NGS and ML-driven research.
My Specializations
- Meta-analysis
- Research Proposal Writing
- Linux & Command Line
- Python for Bioinformatics
- R for Bioinformatics
- Bash Scripting
- NGS Data Analysis
- RNA-Seq Analysis
- Machine Learning for Bioinformatics
- Databases (NCBI, Ensembl, UniProt)
- Visualization (ggplot2, Seaborn)
- Data Cleaning & Preprocessing
- R (Statistics)
- Python (Statistics)
- Arabic ↔ English
- MSc/PhD Guidance
